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AAstretch
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AAstretch

AAstretch is a tool to extract pure and impure poly-residue stretches, such as position, flanking regions, annotations, GO terms, and various other information. The AAstretch package includes AAprepare tool, which links to the genomic EnsEMBL database and utilizes the BioMart services and prepares gene sets for AAstretch. The website contains files from different kingdoms. The CDS function of the AAstretch tool can analyze coding regions that AAexplore tool can visualize.



AAstretch

AAstretch is a tool to extract pure and impure poly-residue stretches, such as position, flanking regions, annotations, GO terms, and various other information. The AAstretch package includes AAprepare tool, which links to the genomic EnsEMBL database and utilizes the BioMart services and prepares gene sets for AAstretch. The website contains files from different kingdoms. The CDS function of the AAstretch tool can analyze coding regions that AAexplore tool can visualize.

Topic

Evolutionary biology; Sequence analysis

Details

  • Operation: Repeat sequence detection; Sequence composition calculation
  • Software interface: Command-line user interface; Graphical user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: The Partenariat Hubert Curien (Franco-Italienne University), Fondi di Ateneo 2009 of the University of Florence, the Agence Nationale de la Recherche, the Human Frontier and the EraNet Neuron (Miprotran) programs, the Centre National de la Recherche Scientifique, the Fondation pour la Recherche Médicale
  • Contact: matteo.ramazzotti _at_ unifi.it
  • Collection: -

Publications

Ramazzotti M, Monsellier E, Kamoun C, Degl'Innocenti D, Melki R "Polyglutamine repeats are associated to specific sequence biases that are conserved among eukaryotes." PLoS ONE 2012; 7(2):e30824 https://doi.org/10.1371/journal.pone.0030824
PMID: 22312432
PMCID: PMC3270027


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