CHOP is a tool to predict protein domain boundaries using Pfam, PDB, and SWISS-PROT databases. The CHOP algorithm includes a homology-based and neural network-based (CHOPnet) methods.
Proteins; Protein folds and structural domains; Protein sites, features and motifs; Gene and protein families; Sequence composition, complexity and repeats
Liu J, Rost B "CHOP: parsing proteins into structural domains." Nucleic Acids Res. 2004; 32(Web Server issue):W569-71 https://doi.org/10.1093/nar/gkh481
PMID: 15215452
PMCID: PMC441619
Liu J, Rost B "Sequence-based prediction of protein domains." Nucleic Acids Res, 2004 https://doi.org/10.1093/nar/gkh684
PMID: 15240828
PMCID: PMC484172
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