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DAnTE
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DAnTE

Dante is an R tool for general omics data analysis tasks. Dante has functions for Merge, sort, filter, apply arbitrary R commands, Normalization via eigenvalues, linear regression, LOESS, quantiles, Via medians, means or quantiles, Shapiro-Wilks, Kruskal-Wallis statistics, Matrix/Scatterplot, 3D plots using RGL, histogram, QQ, boxplots, ellipses, and Venn diagram. Note that Dante is superseded by InfernoRDN.



DAnTE

Dante is an R tool for general omics data analysis tasks. Dante has functions for Merge, sort, filter, apply arbitrary R commands, Normalization via eigenvalues, linear regression, LOESS, quantiles, Via medians, means or quantiles, Shapiro-Wilks, Kruskal-Wallis statistics, Matrix/Scatterplot, 3D plots using RGL, histogram, QQ, boxplots, ellipses, and Venn diagram. Note that Dante is superseded by InfernoRDN.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Protein quantification
  • Input: Excel, Excel 2007, SQLite DB, Access, CSV, tab-delimited text
  • Output: -
  • Software interface: Graphical user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache License v2
    • Cost: Free
  • Version name: 0.0.2
  • Credit: The National Institute of General Medical Sciences, the NIH National Center for Research Resources, Laboratory Directed Research and Development at Pacific Northwest National Laboratory (PNNL), the National Institute of Allergy and Infectious Diseases NIH/DHHS.
  • Contact: proteomics _at_ pnnl.gov | ashoka _at_ tgen.org
  • Collection: -

Publications

Budis J, Kucharik M, Duris F, Gazdarica J, Zrubcova M, Ficek A, Szemes T, Brejova B, Radvanszky J "Dante: genotyping of known complex and expanded short tandem repeats." Bioinformatics. 2019 Apr 15;35(8):1310-1317. https://doi.org/10.1093/bioinformatics/bty791
PMID: 30203023


Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, Camp DG, Anderson GA, Smith RD "DAnTE: a statistical tool for quantitative analysis of -omics data." Bioinformatics 2008; 24(13):1556-8 https://doi.org/10.1093/bioinformatics/btn217
PMID: 18453552
PMCID: PMC2692489


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