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DeconMSn

DeconMSn

DeconMSn is a tool to determine the monoisotopic mass and charge state of parent ions in high-resolution tandem mass spectrometry (MS/MS) data. The DeconMSn algorithm detects charge using a support-vector-machine method.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Peak detection; Deisotoping
  • Input: Thermo RAW, mzXML
  • Output: MGF, dta
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache License v2
  • Cost: Free
  • Version name: -
  • Credit: The NIH National Center for Research Resources, the National Institute of Allergy and Infectious Diseases
  • Contact: proteomics _at_ pnl.gov
  • Collection: -

Publications

Mayampurath AM, Jaitly N, Purvine SO, Monroe ME, Auberry KJ, Adkins JN, Smith RD "DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra." Bioinformatics 2008; 24(7):1021-3 https://doi.org/10.1093/bioinformatics/btn063
PMID: 18304935
PMCID: PMC2720627


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