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GlycoMod

GlycoMod

GlycoMod is a tool to predict the compositions of oligosaccharide structures in proteins using experimentally determined masses. The GlycoMod algorithm works for free, derivatized oligosaccharides and glycopeptides. If the protein is in either the SWISS-PROT or TrEMBL database, GlycoMod computes the experimentally determined masses against all the predicted protease-produced peptides.

Topic

Proteomics; Proteomics experiment; Protein modifications; Structure prediction

Details

  • Operation: Post-translation modification site prediction; Epitope mapping; Ab initio structure prediction; de Novo sequencing
  • Software interface: Web user interface
  • Language: -
  • License: Other
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: catherine.cooper _at_ proteomesystems.com
  • Collection: -

Publications

Cooper CA, Gasteiger E, Packer NH "GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data." Proteomics 2001; 1(2):340-9 https://doi.org/10.1002/1615-9861(200102)1:2<340::AID-PROT340>3.0.CO;2-B
PMID: 11680880


Cooper CA, Gasteiger E, Packer N "Predicting Glycan Composition from Experimental Mass Using GlycoMod" (in) Handbook of Proteomic Methods (Conn P.M. ed.), pp. 225-232, Humana Press, Totowa, NJ (2003)

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