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HHrep

HHrep

HHrep is a web-based tool to de novo identify divergent repeats in protein sequences by pair-wise comparison using hidden Markov models (HMMs). Note that the website (http://hhrep.tuebingen.mpg.de) is not available anymore or temporarily down.

Topic

Sequence sites, features and motifs; Sequence composition, complexity and repeats; Sequencing; Protein folds and structural domains; Protein folding, stability and design

Details

  • Operation: Repeat sequence detection; Ab initio structure prediction; de Novo sequencing; Sequence comparison
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The Max-Plank society
  • Contact: johannes.soeding _at_ tuebingen.mpg.de
  • Collection: -

Publications

Söding J, Remmert M, Biegert A "HHrep: de novo protein repeat detection and the origin of TIM barrels." Nucleic Acids Res. 2006; 34(Web Server issue):W137-42 https://doi.org/10.1093/nar/gkl130
PMID: 16844977
PMCID: PMC1538828


Download and documentation

Currently not available or not maintained.








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