HHrep is a web-based tool to de novo identify divergent repeats in protein sequences by pair-wise comparison using hidden Markov models (HMMs). Note that the website (http://hhrep.tuebingen.mpg.de) is not available anymore or temporarily down.
Sequence sites, features and motifs; Sequence composition, complexity and repeats; Sequencing; Protein folds and structural domains; Protein folding, stability and design
Söding J, Remmert M, Biegert A "HHrep: de novo protein repeat detection and the origin of TIM barrels." Nucleic Acids Res. 2006; 34(Web Server issue):W137-42 https://doi.org/10.1093/nar/gkl130
PMID: 16844977
PMCID: PMC1538828
Currently not available or not maintained.
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