For better experience, turn on JavaScript!


HUF-ZINC

HUF-ZINC

HUF-ZINC is a web-based tool for the prediction of zinc finger motifs in protein sequences. The HUF-ZINC algorithm uses a hidden Markov model (HMM).

Topic

Proteomics; Structure prediction; Protein sites, features and motifs

Details

  • Operation: Protein structural motif recognition; Protein structure prediction
  • Input: FASTA
  • Output: -
  • Software interface: Web service
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: A*STAR.
  • Contact: enquiry _at_ bii.a-star.edu.sg
  • Collection: -

Publications

Maurer-Stroh S, Gao H, Han H, Baeten L, Schymkowitz J, Rousseau F, Zhang L, Eisenhaber F "Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif." J Bioinform Comput Biol 2013; 11(1):1340008 https://doi.org/10.1142/S0219720013400088
PMID: 23427990


Download and documentation








If you find errors, please report here.