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MS Amanda

MS Amanda

MS Amanda is a tool to identify peptide sequences in tandem mass spectra (MS/MS). The MS Amanda algorithm can use HCD, ETD, CID data, and can work as a plugin for the Proteome Discoverer platform.

Topic

Proteomics experiment; Protein expression; Small molecules

Details

  • Operation: Peptide identification
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 2.0.0.14665
  • Credit: The Austrian Science Fund (FWF), the European Community’s Seventh Framework Programme, MeioSys.
  • Contact: viktoria.dorfer _at_ fh-hagenberg.at | marina.strobl _at_ fh-hagenberg.at | stephan.winkler _at_ fh-hagenberg.at | karl.mechtler _at_ imp.ac.at | https://groups.google.com/g/msamanda?pli=1
  • Collection: -

Publications

Dorfer V, Pichler P, Stranzl T, Stadlmann J, Taus T, Winkler S, Mechtler K "MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra." J Proteome Res, 2014 https://doi.org/10.1021/pr500202e
PMID: 24909410
PMCID: PMC4119474


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