MSstats is an R tool to analyze quantitative mass spectrometry data and proteomics. The MSstats algorithm includes functions for the differential detection of proteins in mass spectrometry (MS) with chromatography-based quantification, characterization of MS assays, quality control, and system suitability testing.
Proteomics; Proteomics experiment; Statistics and probability; Workflows
Choi M, Chang CY, Clough T, Broudy D, Killeen T, MacLean B, Vitek O "MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments." Bioinformatics 2014; 30(17):2524-6 https://doi.org/10.1093/bioinformatics/btu305
PMID: 24794931
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