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NetChop

NetChop

NetChop is a tool to predict cleavage sites of the human proteasome. The NetChop algorithm uses a neural network trained on human proteasome data.

Topic

Protein sites, features and motifs

Details

  • Operation: Protein cleavage site prediction
  • Input: FASTA
  • Output: Protein features (txt)
  • Software interface: Command-line user interface; Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X
  • License: Other
  • Cost: Free for academic use
  • Version name: 3.1
  • Maturity: Emerging
  • Credit: The 5th Frame-work Programme of the European Commission, the Netherlands Organization for Scientific Research (NWO), the NIH.
  • Contact: mniel _at_ cbs.dtu.dk
  • Collection: -

Publications

Nielsen M, Lundegaard C, Lund O, Keşmir C "The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage." Immunogenetics 2005; 57(1-2):33-41 https://doi.org/10.1007/s00251-005-0781-7
PMID: 15744535


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