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ProteomeDigestSim
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ProteomeDigestSim

ProteomeDigestSim is a collection of R scripts to predict a proteome coverage done using iterative digestion by MED-FASP.



ProteomeDigestSim

ProteomeDigestSim is a collection of R scripts to predict a proteome coverage done using iterative digestion by MED-FASP.

Topic

Proteomics; Protein properties; Protein hydropathy

Details

  • Operation: Protein cleavage site prediction
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: The Max Planck Society for the Advancement of Science, the European Commission Seventh Framework Program, the Munich Center for Integrated Protein Science (CIPSM).
  • Contact: ekomives _at_ ucsd.edu | jwisniew _at_ biochem.mpg.de | jwisniew _at_ biochem.mpg.de or mmann _at_ biochem.mpg.de
  • Collection: -

Publications

Wiśniewski JR, Mann M "Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis." Anal. Chem. 2012; 84(6):2631-7 https://doi.org/10.1021/ac300006b
PMID: 22324799


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