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Protter

Protter

Protter is a tool to interactively visualize and integrate annotated features and to generate hypotheses with experimental proteomics data. The Protter also has a function to produce publication-quality protein illustrations.

Topic

Proteomics; Protein interactions; Protein folds and structural domains; Protein secondary structure; Protein binding sites

Details

  • Operation: Transmembrane protein visualisation; Topology diagram drawing; GPCR prediction; MRM/SRM; Protein feature detection
  • Software interface: Web user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.0
  • Credit: Swiss National Science Foundation.
  • Contact: protter _at_ msb.biol.ethz.ch
  • Collection: -

Publications

Omasits U, Ahrens CH, Müller S, Wollscheid B "Protter: interactive protein feature visualization and integration with experimental proteomic data." Bioinformatics 2014; 30(6):884-6 https://doi.org/10.1093/bioinformatics/btt607
PMID: 24162465


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