Pyteomics Python library includes tools for MS analyses. The Pyteomics package includes functions for reading LC-MS/MS data, search engine output, protein sequence databases, the theoretical prediction of retention times, electrochemical properties of polypeptides, mass and m/z calculations, and sequence parsing.
Proteomics; Proteomics experiment
Goloborodko AA, Levitsky LI, Ivanov MV, Gorshkov MV "Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics." J Am Soc Mass Spectrom. 2013 Feb;24(2):301-4. Epub 2013 Jan 5. https://doi.org/10.1007/s13361-012-0516-6
PMID: 23292976
Levitsky LI, Klein JA, Ivanov MV, Gorshkov MV. Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework "Pyteomics 4.0: five years of development of a Python proteomics framework" J Proteome Res. 2019 Feb 1;18(2):709-714. https://doi.org/10.1021/acs.jproteome.8b00717
PMID: 30576148
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