REPRO is a tool for identification distantly located repeated sequences in proteins. The REPRO algorithm first finds n (n specified by user) top-scoring non-overlapping local alignments by a modified Smith-Waterman method and clusters them using a graph-based process.
Sequence composition, complexity and repeats; Nucleic acid structure analysis
George RA, Heringa J "The REPRO server: finding protein internal sequence repeats through the Web." Trends Biochem. Sci. 2000; 25(10):515-7 https://doi.org/10.1016/s0968-0004(00)01643-1
PMID: 11203383
Heringa J, Argos P "A method to recognize distant repeats in protein sequences." Proteins, 1993 https://doi.org/ 10.1002/prot.340170407
PMID: 8108381
Heringa J "Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment." Comput Chem, 1999 https://doi.org/10.1016/s0097-8485(99)00012-1
PMID: 10404624
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads