For better experience, turn on JavaScript!


SAMNetWeb

SAMNetWeb

SAMNetWeb is a tool for functional enrichment analysis and visualization of mRNA expression and global proteomics. SAMNetWeb can identify distinct and common pathways across experiments.

Topic

Systems biology; Proteomics; Gene expression; Sequencing; Protein interactions

Details

  • Operation: Sequence analysis; Gene expression profiling; Protein interaction prediction
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: National Institute of Health (NIH), the National Science Foundation (NSF).
  • Contact: sgosline _at_ mit.edu
  • Collection: -

Publications

Gosline SJ, Oh C, Fraenkel E "SAMNetWeb: identifying condition-specific networks linking signaling and transcription." Bioinformatics 2015; 31(7):1124-6 https://doi.org/10.1093/bioinformatics/btu748
PMID: 25414365
PMCID: PMC4382899


Gosline SJ, Spencer SJ, Ursu O, Fraenkel E "SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets." Integr Biol (Camb) 4(11): 1415-27. https://doi.org/10.1039/c2ib20072d
PMID: 23060147
PMCID: PMC3501250


Download and documentation








If you find errors, please report here.