VIPER (pnl)

VIPER (Visual Inspection of Peak/Elution Relationships) is a tool to visualize and characterize the features from LC-MS analyses (FT, TOF, or Orbitrap).

Topic

Proteomics; Proteomics experiment; Imaging

Details

Operation: Mass spectrum visualisation; Chromatographic alignment; Clustering; Filtering; Mass spectra calibration; Chromatogram visualisation
Software interface: Graphical user interface
Language: Visual Basic
Operating system: Microsoft Windows
License: Apache License 2.0

Cost

Version name: 3.49

Credit: EU, Deutsche Krebshilfe.
Contact: proteomics _at_ pnl.gov | matthew.monroe _at_ pnl.gov
Collection: -

Publications

Monroe ME, Tolić N, Jaitly N, Shaw JL, Adkins JN, Smith RD "VIPER: an advanced software package to support high-throughput LC-MS peptide identification." Bioinformatics 23(15): 2021-3. https://doi.org/10.1093/bioinformatics/btm281
PMID: 17545182

Download and documentation

Source: https://github.com/PNNL-Comp-Mass-Spec/V
IPER
Home page: https://omics.pnl.gov/software/viper
Data: https://omics.pnl.gov/sites/default/file
s/software/VIPER_Example_Data.zip

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VIPER (pnl)

VIPER (pnl)

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Download and documentation

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