d-Omix

d-Omix (a Mixer of Protein Domain Analysis Tools) is a web-based tool to analyze, compare and visualize protein domain combinations. It can construct protein phylogenetic trees using distance matrices calculated from protein domain architectures, calculate and visualize the versatility, abundance, and co-presence of protein domains, compare the similarity of proteins based on domain architecture alignments, build a putative protein network based on domain-domain interactions from DOMINE.