msconvert is a tool to convert between various file formats, such as mzML, mz5, mgf, text, ms1, cms1, ms2, cms2, with many options.
Proteomics; Proteomics experiment
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P "A cross-platform toolkit for mass spectrometry and proteomics." Nat. Biotechnol. 2012; 30(10):918-20 https://doi.org/10.1038/nbt.2377
PMID: 23051804
PMCID: PMC3471674
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