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msgfdb2pepxml
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msgfdb2pepxml

msgfdb2pepxml is a tool to convert MS-GFDB output to pepXML-format. The msgfdb2pepxml algorithm uses regular expressions to recognize enzyme uses and cleavage rules and supports PSI-MS controlled vocabulary version 3.10 (2011-08-24). The msgfdb2pepxml converter recalculates peptide and post-translational modification masses with specified precision.



msgfdb2pepxml

msgfdb2pepxml is a tool to convert MS-GFDB output to pepXML-format. The msgfdb2pepxml algorithm uses regular expressions to recognize enzyme uses and cleavage rules and supports PSI-MS controlled vocabulary version 3.10 (2011-08-24). The msgfdb2pepxml converter recalculates peptide and post-translational modification masses with specified precision.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Protein molecular weight calculation; Formatting
  • Input: mzXML | TSV | FASTA
  • Output: pepXML
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache-2.0
    • Cost: Free
  • Version name: 2.0
  • Credit: -
  • Contact: magnus.palmblad _at_ gmail.com
  • Collection: -

Publications

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