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ASCOT

ASCOT

ASCOT is a web-based tool for querying, summarizing, and visualization of alternative splicing models in public human and mouse RNA-Seq data. ASCOT uses Snaptron and Recount2.

Topic

RNA-seq; RNA splicing

Details

  • Operation: Query and retrieval
  • Software interface: Web user interface
  • Language: -
  • Operating system: Microsoft Windows; Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Johns Hopkins Kavli Neuroscience Discovery Institute, The Institute for Data Intensive Engineering and Science (IDIES) at Johns Hopkins University.
  • Contact: ascotfeedback _at_ gmail.com
  • Collection: -

Publications

Jonathan P Ling, Christopher Wilks, Rone Charles, Devlina Ghosh, Lizhi Jiang, Clayton P Santiago, Bo Pang, Anand Venkataraman, Brian S Clark, Abhinav Nellore, Ben Langmead, Seth Blackshaw "ASCOT identifies key regulators of neuronal subtype-specific splicing" biorxiv.org https://doi.org/10.1101/501882


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