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AUGUSTUS
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AUGUSTUS

AUGUSTUS is a tool to predict genes ab initio in eukaryote genome sequences. The AUGUSTUS algorithm uses a generalized Hidden Markov Model.



AUGUSTUS

AUGUSTUS is a tool to predict genes ab initio in eukaryote genome sequences. The AUGUSTUS algorithm uses a generalized Hidden Markov Model.

Topic

Gene transcripts; RNA-seq; Gene and protein families; Proteomics

Details

  • Operation: Multiple sequence alignment; Gene prediction; Ab initio structure prediction
  • Software interface: Web user interface
  • Language: C++
  • Operating system: Linux; Mac OS X
  • License: Artistic-1.0
    • Cost: -
  • Version name: -
  • Credit: -
  • Contact: mario.stanke _at_ uni-greifswald.de
  • Collection: -

Publications

Stanke M, Steinkamp R, Waack S, Morgenstern B "AUGUSTUS: a web server for gene finding in eukaryotes." Nucleic Acids Res. 2004; 32(Web Server issue):W309-12 https://doi.org/10.1093/nar/gkh379
PMID: 15215400
PMCID: PMC441517


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