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Augur

Augur

Augur is a tool to prioritize cell types in RNA-seq (scRNA-seq) data. The Augur algorithm uses a machine-learning method.

Topic

RNA-Seq; Gene expression

Details

  • Operation: Simulation
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.0.0
  • Credit: -
  • Contact: Jordan Squair jordansquair _at_ gmail.com | Michael Skinnider michael.skinnider _at_ msl.ubc.ca
  • Collection: -

Publications

Skinnider Michael A., Squair Jordan W., Kathe Claudia, Anderson Mark A., Gautier Matthieu, Matson Kaya J.E., Milano Marco, Hutson Thomas H., Barraud Quentin, Phillips Aaron A., Foster Leonard J., La Manno Gioele, Levine Ariel J., Courtine Grégoire "Cell type prioritization in single-cell data" bioRxiv https://doi.org/10.1101/2019.12.20.884916


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