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BRAKER1

BRAKER1

BRAKER1 is a tool for the annotation of genomes based on RNA-seq data. The BRAKER1 algorithm uses an unsupervised learning method and does not require pre-training.

Topic

RNA-Seq; RNA; Workflows

Details

  • Operation: Genome annotation
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux
  • License: Artistic-1.0
  • Cost: Free
  • Version name: -
  • Credit: The US National Institutes of Health, the German Research Foundation.
  • Contact: Katharina J. Hoff katharina.hoff _at_ uni-greifswald.de
  • Collection: -

Publications

Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M "BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS." Bioinformatics 2016; 32(5):767-9 https://doi.org/10.1093/bioinformatics/btv661
PMID: 26559507
PMCID: PMC6078167


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