For better experience, turn on JavaScript!

BranchedGP
Home » Tools » RNA-seq Tools and Software » scRNA-seq » BranchedGP

BranchedGP

BranchedGP is a tool to detect gene-specific branching dynamics and estimate branching times. The algorithm can also predict likely branching regions. Other names: BGP (Branching Gaussian process).



BranchedGP

BranchedGP is a tool to detect gene-specific branching dynamics and estimate branching times. The algorithm can also predict likely branching regions. Other names: BGP (Branching Gaussian process).

Topic

Statistics and probability; RNA-seq

Details

  • Operation: Gene expression analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Apache-2.0
    • Cost: Free
  • Version name: 0.1
    • Maturity: Emerging
  • Credit: Medical Research Council.
  • Contact: Alexis Boukouvalas alexis.boukouvalas _at_ manchester.ac.uk
  • Collection: -

Publications

Boukouvalas A, Hensman J, Rattray M "BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process." Genome Biol. 2018 May 29;19(1):65. https://doi.org/10.1186/s13059-018-1440-2
PMID: 29843817
PMCID: PMC5975664


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads