BreakFusion is a tool to identify gene fusions in whole transcriptome paired-end sequencing data. The BreakFusion algorithm uses a combination of alignment strength and paired-end read alignment analyses.
Assembly; RNA-seq; Genetics; RNA-seq; RNA
Chen K, Wallis JW, Kandoth C, Kalicki-Veizer JM, Mungall KL, Mungall AJ, Jones SJ, Marra MA, Ley TJ, Mardis ER, Wilson RK, Weinstein JN, Ding L "BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data." Bioinformatics 2012; 28(14):1923-4 https://doi.org/10.1093/bioinformatics/bts272
PMID: 22563071
PMCID: PMC3389765
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