CALISTA (Clustering and Lineage Inference in Single-Cell Transcriptional Analysis) is a tool for analysis of single-cell RNA-seq data. The CALISTA algorithm includes functions for analysis of differential expression, single-cell clustering, cell-lineage reconstruction, and pseudo-time ordering.
Gene expression; RNA-seq
Nan Papili Gao, Thomas Hartmann, Tao Fang, Rudiyanto Gunawan "CALISTA: Clustering And Lineage Inference in Single-Cell Transcriptional Analysis" biorxiv.org https://doi.org/10.1101/257550
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