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DARIO

DARIO

DARIO is a web-based tool to detect and analyze ncRNA, microRNA, snoRNA, and tRNA from RNA-seq data. DARIO provides various analyses from read normalization and differential expression to quantification and prediction of ncRNA.

Topic

Functional, regulatory and non-coding RNA; RNA-Seq; Experimental design and studies; Gene transcripts; Sequencing

Details

  • Operation: Quantification; Analysis; RNA-Seq quantification; Gene expression profiling; Gene expression analysis
  • Input: SAM
  • Output: -
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: LIFE - Leipzig Research Center for Civilization Diseases, University Leipzig, European Social Fund and the Free State of Saxony, European Union.
  • Contact: dario _at_ bioinf.uni-leipzig.de
  • Collection: -

Publications

Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S "DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments." Nucleic Acids Res. 2011; 39(Web Server issue):W112-7 https://doi.org/10.1093/nar/gkr357
PMID: 21622957
PMCID: PMC3125765


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