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DRAP

DRAP

DRAP (de novo RNA-Seq Assembly Pipeline) pipeline tool uses two separate assemblers, Trinity and Oasis, to make de novo RNA-seq assemblies. The DRAP algorithm has three modules: runDrap, runMeta, and runAssessment.

Topic

RNA-seq; Sequence assembly

Details

  • Operation: Transcriptome assembly; Sequence analysis
  • Software interface: Command-line user interface
  • Language: Perl;Python
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.92
  • Maturity: Mature
  • Credit: Agence Nationale Recherche, France, the France Génomique.
  • Contact: sigenae-support _at_ listes.inra.fr
  • Collection: -

Publications

Cabau C, Escudie F, Djari A, Guiguen Y, Bobe J, Klopp C "Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies." PeerJ. 2017 Feb 16;5:e2988. https://doi.org/10.7717/peerj.2988
PMID: 28224052
PMCID: PMC5316280


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