DeFuse is a tool for the identification of gene fusions in RNA-seq data. The deFuse algorithm examines all conflicting paired-end sequence alignments to find fusion boundaries.
Gene structure; RNA-seq; Gene transcripts; Oncology
McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP "deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data." PLoS Comput. Biol. 2011; 7(5):e1001138 https://doi.org/10.1371/journal.pcbi.1001138
PMID: 21625565
PMCID: PMC3098195
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