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FASTX-Toolkit
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FASTX-Toolkit

FASTX-Toolkit consists of a collection of tools for pre-processing data from FASTA and FASTQ files. The FASTX-Toolkit includes the following tools (not maintained): 1. FASTQ-Statistics, 2. FASTQ-Quality-BoxPlot, 3. FASTQ-Nucleotides-Distribution (charts), 4. FASTQ-Quality-Converter, 5. FASTQ-Quality-Filter, 6. FASTX-Artifacts-Filter, 7. FASTX-Barcode-Splitter, 8. FASTX-Clipper, 9. FASTA-Clipping-Histogram, 10. FASTX-Reverse-Complement, and 11. FASTX-Trimmer.



FASTX-Toolkit

FASTX-Toolkit consists of a collection of tools for pre-processing data from FASTA and FASTQ files. The FASTX-Toolkit includes the following tools (not maintained): 1. FASTQ-Statistics, 2. FASTQ-Quality-BoxPlot, 3. FASTQ-Nucleotides-Distribution (charts), 4. FASTQ-Quality-Converter, 5. FASTQ-Quality-Filter, 6. FASTX-Artifacts-Filter, 7. FASTX-Barcode-Splitter, 8. FASTX-Clipper, 9. FASTA-Clipping-Histogram, 10. FASTX-Reverse-Complement, and 11. FASTX-Trimmer.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Read pre-processing; Sequence editing; Sequencing quality control
  • Input: FASTA, FASTQ
  • Output: -
  • Software interface: Web user interface; command-line user interface
  • Language: C++;C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU AGPL v>=3
    • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: gordon _at_ cshl.edu | assafgordon _at_ gmail.com
  • Collection: -

Publications

Download and documentation







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