GEM Mapper is a tool for aligning paired-end reads to a reference genome. The GEM algorithm uses seed and extend technique and enables exhaustive searches given specific criteria.
GEM Mapper is a tool for aligning paired-end reads to a reference genome. The GEM algorithm uses seed and extend technique and enables exhaustive searches given specific criteria.
Credit:
Ministerio de Educación y Ciencia (Spain), the US National Institutes of Health/National Human Genome Research Institute, the European Union 7th Framework integrating project Revolutionary Approaches and Devices for Nucleic Acid Analysis (READNA), the European Union 7th Framework project European Sequencing and Genotyping Infrastructure (ESGI)
Contact:
Santiago Marco-Sola santiagomsola _at_ gmail.com | Paolo Ribeca paolo.ribeca _at_ gmail.com | Alejandro Chacon alejandro.chacond _at_ gmail.com | Simon Heath simon.heath _at_ gmail.com
Collection: -
Publications
Marco-Sola S, Sammeth M, Guigo R, Ribeca P "The GEM mapper: fast, accurate and versatile alignment by filtration." Nat Methods. 2012 Dec;9(12):1185-8. https://doi.org/10.1038/nmeth.2221
PMID: 23103880