GEM-Tools is an API and a Python API that simplify the usage of the GEM Mapper tool (See links). Besides, GEM-Tools includes a command-line interface, gemtools, for initiating the RNAseq pipeline, indexer module, statistics module, and various other tools.
Sequence analysis
Marco-Sola S, Sammeth M, Guigo R, Ribeca P "The GEM mapper: fast, accurate and versatile alignment by filtration." Nat Methods. 2012 Dec;9(12):1185-8. https://doi.org/10.1038/nmeth.2221
PMID: 23103880
Faust GG, Hall IM "GEM: crystal-clear DNA alignment" Nat Methods. 2012 Dec;9(12):1159-61. https://doi.org/10.1038/nmeth.2256
PMID: 23223169
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