GENE-Counter is a pipeline tool for the analysis of differential gene expression in RNA-seq data. GENE-Counter is ready for use with CASHX, Bowtie, and BWA, but can use alignment tool that uses SAM file format.
RNA-Seq; Sequencing; Gene expression
Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH "GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences." PLoS ONE 2011; 6(10):e25279 https://doi.org/10.1371/journal.pone.0025279
PMID: 21998647
PMCID: PMC3188579
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads