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GPSeq
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GPSeq

GPSeq is a tool to quantify transcriptomes using RNA-seq data. The GPSeq algorithm uses a two-parameter generalized Poisson model to estimate the position-specific read counts.



GPSeq

GPSeq is a tool to quantify transcriptomes using RNA-seq data. The GPSeq algorithm uses a two-parameter generalized Poisson model to estimate the position-specific read counts.

Topic

RNA-Seq

Details

  • Operation: RNA-Seq quantification; Differential gene expression analysis
  • Software interface: Command-line user interface; Library
  • Language: R, C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
    • Cost: Free
  • Version name: 0.5
  • Credit: National Institutes of Health (NIH), the University of Southern California (USC).
  • Contact: Sudeep Srivastava sudeepsr _at_ usc.edu | Liang Chen liangche _at_ usc.edu
  • Collection: -

Publications

Srivastava S, Chen L "A two-parameter generalized Poisson model to improve the analysis of RNA-seq data." Nucleic Acids Res. 2010; 38(17):e170 https://doi.org/10.1093/nar/gkq670
PMID: 20671027
PMCID: PMC2943596


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