Granatum is a pipeline tool for single-cell RNA-seq (scRNA-seq) data analysis. The Granatum package contains modules for quality control, normalization, clustering, differential gene expression, and enrichment analysis, protein network interaction visualization, and cell pseudo-time pathway construction. The graphical user interface guides through all the analysis steps.
RNA-seq
Zhu X, Wolfgruber TK, Tasato A, Arisdakessian C, Garmire DG, Garmire LX "Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists." Genome Med. 2017 Dec 5;9(1):108. https://doi.org/10.1186/s13073-017-0492-3
PMID: 29202807
PMCID: PMC5716224
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