Grape

Grape is a pipeline environment comprising of a set of RNA-seq analysis tools.

Topic

Workflows; Functional, regulatory and non-coding RNA; RNA-Seq

Operation: Sequencing quality control; Splicing model analysis; Read mapping; RNA-Seq analysis
Software interface: Command-line user interface
Language: R;Java;Perl;Python
Operating system: Linux
License: Not stated

Cost

Credit: The European Union Seventh Framework Programme, Ministerio de Economa y Competitividad (Spain), INB GNV-1 and PN de I+D+i, ISCIIISubdireccin General de Evaluacin y Fomento de la Investigacin(Spain) and cofunded by FEDER.
Contact: Roderic GuigÃ³ roderic.guigo _at_ crg.cat | David G. Knowles david.gonzalez _at_ crg.eu
Collection: -

Knowles DG, Röder M, Merkel A, Guigó R "Grape RNA-Seq analysis pipeline environment." Bioinformatics 2013; 29(5):614-21 https://doi.org/10.1093/bioinformatics/btt016
PMID: 23329413
PMCID: PMC3582270

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