Topic

Gene transcripts; RNA splicing; RNA-Seq; Gene expression

Details

Publications

Takeda J, Suzuki Y, Sakate R, Sato Y, Gojobori T, Imanishi T, Sugano S "H-DBAS: human-transcriptome database for alternative splicing: update 2010." Nucleic Acids Res. 2010; 38(Database issue):D86-90 https://doi.org/10.1093/nar/gkp984
PMID: 19969536
PMCID: PMC2808982

Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T "Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs." Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12. https://doi.org/10.1093/nar/gkl507
PMID: 16914452
PMCID: PMC1557807

Takeda J, Suzuki Y, Nakao M, Kuroda T, Sugano S, Gojobori T, Imanishi T "H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational." Nucleic Acids Res. 2007 Jan;35(Database issue):D104-9. Epub 2006 Nov 27. https://doi.org/10.1093/nar/gkl854
PMID: 17130147
PMCID: PMC1716722

Takeda J, Suzuki Y, Sakate R, Sato Y, Seki M, Irie T, Takeuchi N, Ueda T, Nakao M, Sugano S, Gojobori T, Imanishi T "Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs." Nucleic Acids Res. 2008 Nov;36(20):6386-95. https://doi.org/10.1093/nar/gkn677
PMID: 18838389
PMCID: PMC2582632

Shimada MK, Hayakawa Y, Takeda J, Gojobori T, Imanishi T "A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing." BMC Evol Biol. 2010 Apr 30;10:122. https://doi.org/10.1186/1471-2148-10-122
PMID: 20433709
PMCID: PMC2882926

Imanishi T et al. "Integrative annotation of 21,037 human genes validated by full-length cDNA clones." PLoS Biol. 2004 Jun;2(6):e162. Epub 2004 Apr 20. https://doi.org/10.1371/journal.pbio.0020162
PMID: 15103394
PMCID: PMC393292

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