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MapPER

MapPER

MapPER is a tool to align paired-end reads in RNA-seq data sets. The MapPER algorithm uses an expectation-maximization method to assign likelihood values.

Topic

RNA-Seq; Transcriptomics; Bioinformatics

Details

  • Operation: Prediction and recognition; Read mapping; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.12
  • Credit: National Science Foundation, National Institutes of Health, Alfred P. Sloan Foundation.
  • Contact: Jinze Liu liuj _at_ cs.uky.edu
  • Collection: -

Publications

Hu Y, Wang K, He X, Chiang DY, Prins JF, Liu J "A probabilistic framework for aligning paired-end RNA-seq data." Bioinformatics 2010; 26(16):1950-7 https://doi.org/10.1093/bioinformatics/btq336
PMID: 20576625
PMCID: PMC2916723


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