NGScloud

A tool for analysis of RNA-seq data at Amazon cloud computing services. The NGScloud has an interface for controlling Amazon's hardware resources and analysis workflow. The NGScloud algorithm can run workflows in numerous different instances.

Details
Topic
Publications
Download and documentation

NGScloud

Topic

RNA-seq; Sequence analysis; Functional, regulatory and non-coding RNA

Details

Operation: RNA-Seq analysis
Software interface: Command-line user interface
Language: Python
Operating system: Linux; Mac OS X
License: GNU General Public License v3

Cost

Version name: 0.94

Maturity:

Credit: Spanish National Parks Agency, Ministry of Agriculture, Spanish Ministry of Economy and Competitiveness, an Amazon Research Grant.
Contact: Unai López de Heredia unai.lopezdeheredia _at_ upm.es
Collection: -

Publications

Mora-Marquez F, Vazquez-Poletti JL, Lopez de Heredia U "NGScloud: RNA-seq analysis of non-model species using cloud computing." Bioinformatics. 2018 Oct 1;34(19):3405-3407. https://doi.org/10.1093/bioinformatics/bty363
PMID: 29726914

Download and documentation

Source: https://github.com/GGFHF/NGScloud
Documentation: https://github.com/GGFHF/NGScloud/blob/m
aster/README.md
Home page: https://github.com/GGFHF/NGScloud/

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads

NGScloud

NGScloud

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools