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NGScloud

NGScloud

A tool for analysis of RNA-seq data at Amazon cloud computing services. The NGScloud has an interface for controlling Amazon's hardware resources and analysis workflow. The NGScloud algorithm can run workflows in numerous different instances.

Topic

RNA-seq; Sequence analysis; Functional, regulatory and non-coding RNA

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.94
  • Maturity: Emerging
  • Credit: Spanish National Parks Agency, Ministry of Agriculture, Spanish Ministry of Economy and Competitiveness, an Amazon Research Grant.
  • Contact: Unai López de Heredia unai.lopezdeheredia _at_ upm.es
  • Collection: -

Publications

Mora-Marquez F, Vazquez-Poletti JL, Lopez de Heredia U "NGScloud: RNA-seq analysis of non-model species using cloud computing." Bioinformatics. 2018 Oct 1;34(19):3405-3407. https://doi.org/10.1093/bioinformatics/bty363
PMID: 29726914


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