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OEFinder

OEFinder

OEFinder is a visualization tool for ordering effects in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-Seq; Data visualisation; RNA

Details

  • Operation: Prediction and recognition; Visualisation
  • Software interface: Graphical user interface
  • Language: R?Shiny, RGtk2
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: 0.0.2
  • Credit: Charlotte Geyer Foundation and Morgridge Institute for Research.
  • Contact: Ning Leng lengning1 _at_ gmail.com | Ron Stewart rstewart _at_ morgridge.org
  • Collection: -

Publications

Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R "OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data." Bioinformatics 2016; 32(9):1408-10 https://doi.org/10.1093/bioinformatics/btw004
PMID: 26743507
PMCID: PMC4848403


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