OEFinder

OEFinder is a visualization tool for ordering effects in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-Seq; Data visualisation; RNA

Details

Operation: Prediction and recognition; Visualisation
Software interface: Graphical user interface
Language: R?Shiny, RGtk2
Operating system: Linux
License: Not stated

Cost

Version name: 0.0.2

Credit: Charlotte Geyer Foundation and Morgridge Institute for Research.
Contact: Ning Leng lengning1 _at_ gmail.com | Ron Stewart rstewart _at_ morgridge.org
Collection: -

Publications

Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R "OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data." Bioinformatics 2016; 32(9):1408-10 https://doi.org/10.1093/bioinformatics/btw004
PMID: 26743507
PMCID: PMC4848403

Download and documentation

Source: https://github.com/lengning/OEFinder
Documentation: https://github.com/lengning/OEFinder/blo
b/master/OEFinder_vignette.pdf
Home page: https://github.com/lengning/OEFinder
Data: https://github.com/lengning/OEFinder/tre
e/master/Example_data

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OEFinder

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