A tool for mapping of spliced mRNA-seq reads. The OLego algorithm uses the Burrows-Wheeler transform for the mapping of seeds, splice junctions, and detection of exons. The algorithm also allows multiple threads.
Genomics; RNA-seq
Wu J, Anczukow O, Krainer AR, Zhang MQ, Zhang C "OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds." Nucleic Acids Res. 2013 May 1;41(10):5149-63. Apr 9. https://doi.org/10.1093/nar/gkt216
PMID: 23571760
PMCID: PMC3664805
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