ORMAN (Optimal Resolution of Multimapping Ambiguity of RNA-Seq Reads) is a tool to resolve transcript mappings in RNA-seq data. Th ORMAN algorithm uses combinatorial optimization, integer linear programming, heuristics, and well-know approximation methods.
RNA-Seq; RNA; Transcriptomics
Dao P, Numanagic I, Lin YY, Hach F, Karakoc E, Donmez N, Collins C, Eichler EE, Sahinalp SC "ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms." Bioinformatics. 2014 Mar 1;30(5):644-51. 2013 Oct 15. https://doi.org/10.1093/bioinformatics/btt591
PMID: 24130305
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