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PVAAS

PVAAS

PVAAS is a tool for the identification of anomalous splicing variants in RNA-seq data.

Topic

RNA; RNA-Seq; Sequence analysis; RNA splicing

Details

  • Operation: Splicing model analysis
  • Input: FASTA, BED, BAM, BAI
  • Output: -
  • Software interface: Command-line user interface
  • Language: Python, C
  • Operating system: Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: 0.1.5
  • Credit: The Center for Individualized Medicine, Mayo Clinic.
  • Contact: Liguo Wang wangliguo78 _at_ gmail.com | Jean-Pierre A. Kocher kocher.jeanpierre _at_ mayo.edu
  • Collection: -

Publications

Wang L, Nie JJ, Kocher JP "PVAAS: identify variants associated with aberrant splicing from RNA-seq." Bioinformatics 2015; 31(10):1668-70 https://doi.org/10.1093/bioinformatics/btv001
PMID: 25573917
PMCID: PMC4807355


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