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PoissonSeq
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PoissonSeq

PoissonSeq is an R library to normalize, estimate false discovery rate (FDR), and testing of RNA-seq data sets. The PoissonSeq algorithm uses a Poisson log-linear model.



PoissonSeq

PoissonSeq is an R library to normalize, estimate false discovery rate (FDR), and testing of RNA-seq data sets. The PoissonSeq algorithm uses a Poisson log-linear model.

Topic

RNA-seq; Transcriptomics; Statistics and probability

Details

  • Operation: Data handling; Statistical calculation; Standardisation and normalisation
  • Software interface: Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v>=2
    • Cost: Free
  • Version name: 1.1.2
    • Maturity: Mature
  • Credit: National Science Foundation (NSF), National Institutes of Health (NIH).
  • Contact: Jun Li jun.li _at_ nd.edu
  • Collection: -

Publications

Li J, Witten DM, Johnstone IM, Tibshirani R "Normalization, testing, and false discovery rate estimation for RNA-sequencing data." Biostatistics. 2012 Jul;13(3):523-38. 2011 Oct 14. https://doi.org/10.1093/biostatistics/kxr031
PMID: 22003245
PMCID: PMC3372940


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