For better experience, turn on JavaScript!


correct_bacode_py

correct_bacode_py

correct_bacode.py is a tool to correct sequencing errors in cell barcoding that contain RT primers for Quartz-Seq2 (a high-throughput single-cell RNA-sequencing method, see links).

Topic

RNA-seq; Sequencing; Sequence analysis

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R;Python
  • Operating system: Linux; Mac OS X
  • License: The MIT License
  • Cost: Free
  • Version name: -
  • Credit: The Projects for Technological Development, Research Center Network for Realization of Regenerative Medicine by Japan, the Japan Agency for Medical Research and Development (AMED), the Japan Science and Technology Agency (JST), MEXT KAKENHI, SPS KAKENHI, the Platform Project for Supporting Drug Discovery and Life Science Research (Platform for Drug Discovery, Informatics, and Structural Life Science); AMED, JST CREST.
  • Contact: Nikaido I itoshi.nikaido _at_ riken.jp
  • Collection: -

Publications

Sasagawa Y, Danno H, Takada H, Ebisawa M, Tanaka K, Hayashi T, Kurisaki A, Nikaido I "Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads." Genome Biol. 2018 Mar 9;19(1):29. https://doi.org/10.1186/s13059-018-1407-3
PMID: 29523163
PMCID: PMC5845169


Download and documentation








If you find errors, please report here.