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RAP
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RAP

RAP is a web-based tool for RNA-seq data analysis. The RAP workflow includes FastQC, NGS QC Toolkit, Tophat, Cufflinks, HTSeq, SpliceTrap, Cuffdiff2, DESeq, and ChimeraScan tools.



RAP

RAP is a web-based tool for RNA-seq data analysis. The RAP workflow includes FastQC, NGS QC Toolkit, Tophat, Cufflinks, HTSeq, SpliceTrap, Cuffdiff2, DESeq, and ChimeraScan tools.

Topic

Bioinformatics; Sequencing; Transcriptomics; RNA-Seq

Details

  • Operation: RNA-Seq Analysis
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free for academic use
  • Version name: -
  • Credit: Ministero dell'Istruzione, Università e Ricerca, Micromap, Virtualab, Consiglio Nazionale delle Ricerche.
  • Contact: Graziano Pesole graziano.pesole _at_ uniba.it | Mattia D'Antonio m.dantonio _at_ cineca.it
  • Collection: -

Publications

D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignano T, Pesole G "RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application." BMC Genomics. 2015;16:S3. https://doi.org/10.1186/1471-2164-16-S6-S3
PMID: 26046471
PMCID: PMC4461013


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