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RDDpred

RDDpred

RDDpred is a tool to predict RNA editing with specific conditions in RNA-seq data. The RDDpred algorithm uses a Random Forest RDD classifier to find candidate RNA-editing events.

Topic

RNA-Seq; Structure prediction; Gene transcripts; Machine learning

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: 1.1
  • Maturity: Stable
  • Credit: the Bio & Medical Technology Development Program of the NRF, Korean government, MSIP, the National Research Foundation of Korea(NRF), Seoul National University Office of Research.
  • Contact: mdy89 _at_ snu.ac.kr
  • Collection: -

Publications

Kim MS, Hur B, Kim S "RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data." BMC Genomics. 2016 Jan 11;17 Suppl 1:5. https://doi.org/10.1186/s12864-015-2301-y
PMID: 26817607
PMCID: PMC4895604


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