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Rail-RNA
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Rail-RNA

Rail-RNA is a tool to align spliced sequences from RNA-seq data. Rail-RNA is cloud-enabled and can analyze multiple samples at a time.



Rail-RNA

Rail-RNA is a tool to align spliced sequences from RNA-seq data. Rail-RNA is cloud-enabled and can analyze multiple samples at a time.

Topic

RNA-seq; Alignment

Details

  • Operation: Sequence alignment
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: The MIT License
    • Cost: Free
  • Version name: 0.2.4b
    • Maturity: Stable
  • Credit: NIH/NIGMS, the Institute for Data Intensive Engineering and Science (IDIES) at Johns Hopkins University, Consejo Nacional de Ciencia y Tecnología México, Sloan Research Fellowship, Fundación UNAM, National Science Foundation.
  • Contact: Nellore A anellore _at_ gmail.com | Langmead B langmea _at_ cs.jhu.edu
  • Collection: -

Publications

Nellore A, Collado-Torres L, Jaffe AE, Alquicira-Hernandez J, Wilks C, Pritt J, Morton J, Leek JT, Langmead B "Rail-RNA: scalable analysis of RNA-seq splicing and coverage." Bioinformatics. 2017 Dec 15;33(24):4033-4040. https://doi.org/10.1093/bioinformatics/btw575
PMID: 27592709
PMCID: PMC5860083


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