RobiNA

RobiNA is a pipeline tool for RNA-seq differential expression analysis, covering all analysis RNA-seq steps. RobiNA can use data from Illumina/Solexa, Affymetrix, and generic tabular two-color or single-channel array data. The package includes quality control, filtering, analysis of differential gene expression, and visualization of results. RobiNA uses bowtie for mapping of reads, DESeq, and edgeR for differential gene expression analysis. The output is compatible with MapMan and PageMan.