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SPAR

SPAR

A web portal for analysis, annotation, and visualization of RNA-seq data sets. The SPAR portal supports data originating from smRNA-seq, short total RNA sequencing, single-cell small RNA-seq, and microRNA-seq. Additionally, SPAR contains sncRNA data sets and data from 185 human tissues from ENCODE.

Topic

RNA-seq; Functional, regulatory and non-coding RNA; Gene transcripts

Details

  • Operation: RNA-Seq analysis; Gene expression profiling; miRNA expression analysis
  • Software interface: Web user interface
  • Language: Javascript;R;C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: National Institute of General Medical Sciences, National Institute on Aging.
  • Contact: Yuk Yee Leung Yuk Yee Leung | SPAR _at_ lisanwanglab.org
  • Collection: -

Publications

Kuksa PP, Amlie-Wolf A, Katanic Z, Valladares O, Wang LS, Leung YY "SPAR: small RNA-seq portal for analysis of sequencing experiments." Nucleic Acids Res. 2018 Jul 2;46(W1):W36-W42. https://doi.org/10.1093/nar/gky330
PMID: 29733404
PMCID: PMC6030839


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